PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G41200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 665aa    MW: 73420.2 Da    PI: 4.9998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G41200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06113134426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C +f++ G C  GdrC F H 
  ONIVA02G41200.1 113 VPCYYFQK-GMCVKGDRCAFLHL 134
                      69******.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.9E-41644IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6381645IPR000571Zinc finger, CCCH-type
PfamPF156632.8E-111771No hitNo description
PROSITE profilePS5010311.0284773IPR000571Zinc finger, CCCH-type
SMARTSM003562.54972IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554109136IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.3E-5112133IPR000571Zinc finger, CCCH-type
PfamPF146081.7114133No hitNo description
Gene3DG3DSA:4.10.1000.105.3E-4114133IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MDSAVRPPVD AEEARRRRST DCIYFLASPL TCKKGSECEY RHSDAARMNP RDCWYWFNGN  60
CANPKCSFRH PPLDGLVGAP TTPRTSQQSA PQVSVPAQAP VPNPASGTAK QGVPCYYFQK  120
GMCVKGDRCA FLHLPQATGS PAPQHTTKVF APASVPHPQL KNSWTKPNSS AQQNAPPAIF  180
DKPKDSAHNG KTAQKQNLTN RPGHSSGIIH DKKGSYMPSG VTKNYRPPPS TGDDLAENGV  240
EMGEFVREPS AGSDVLTGGA DDNTEQSLRE DRGAYRRTNG EQHIGMLRQT HDSYGFERSH  300
RGSAEKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSDRH NVYPEDERHD  360
RHRRRGEEQA SNDGVSSSRL RGRIRLPAET TFDRLGLQPE KERDRGPRAR LSPPSQTDLR  420
GKLHDRLKAK PNEDVSGNVQ SSLSKANEDA ESLNFAGPKS LAELKAKKVA GSLMKSSRSL  480
TGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKREADS GNATDFGSKR EEHSGGDEEG  540
SQNDFRNIED DIVGMNTEGN GEEAFRSDDI VGMNTEGNGE EAFQPEDDVV YGDSLSPADD  600
IAAEAADDAS RELEEQQDVE TAEEYDYEMD DVNAAEENDY QEYEDEDDDL EDDDDFARKV  660
GVMIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040820.0AP004082.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1149_C12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626088.10.0PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X1
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A0E0GFC30.0A0A0E0GFC3_ORYNI; Uncharacterized protein
STRINGLOC_Os02g58440.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123